
Boutique hotels in Marathon
Find and book unique boutique hotels on Airbnb
Quick stats about boutique hotels in Marathon

Total holiday rentals
Explore 30 holiday rentals in Marathon

Nightly prices starting at
Marathon holiday rentals start at €191 per night before taxes and fees

Verified guest reviews
Over 1,630 verified reviews to help you choose

Pet-friendly holiday rentals
Find 10 rentals that welcome pets

Holiday rentals with a pool
30 properties feature pools

Rentals with dedicated workspaces
10 properties have a dedicated workspace

Wifi availability
30 of Marathon holiday rentals include wifi access

Popular amenities for guests
Guests love Kitchen, Wifi and Pool across Marathon rentals

4.7 Average rating
Marathon stays receive an average rating of 4.7 out of 5 from guests
Top-rated boutique hotels in Marathon
Guests agree: these boutique hotels are highly rated for location, cleanliness and more.

Conch House 2 Bedroom King ADA at Grassy Flats
Enjoy a Grassy Key Getaway in our spacious two-bedroom suite! With private bedrooms that each have one king bed, you can comfortably accommodate up to four guests, with extra room to store your water sports gear. A fully equipped kitchen makes it ideal for cooking family meals and dining comfortably in the suite. This suite has an ADA accessible bathroom with a walk-in shower. This unit has two king beds, 2.5 bathrooms, a full kitchen, living/dining area, and two private balconies.

Large House w/ FREE Sailboat, Kayaks, Snorkel etc
The Main House is a cottage at Key Largo Cottages. We are located on the bay side of Key Largo near some of the best dive/snorkel sites, island excursions, bars, restaurants, & the Everglades. Experience water fun! A stay in one of our cottages comes with unlimited use of our kayaks, canoes, paddle boards, snorkel gear, fishing gear, &, of course, the use of one of our 22' sailboats, if you have recent sailing experience on keel boats! You won't find a better deal in the Keys!

Marathon Oceanfront Suite | King Bed + Balcony
Escape to the Oceanfront Balcony | 1BR King (Suite), where breathtaking ocean views and luxury amenities await. This spacious suite features a plush king bed, a separate living area with a queen sofa bed, in-room refreshments including a beverage cooler and coffee/tea maker, and a spa-like bath with a walk-in rainfall shower. Step onto your private oceanview terrace, and experience five pools, beachfront dining, and endless coastal adventures in the Florida Keys.

Conch Key Villas #1. Fun, fishing & great sunsets
Studio One's waterfront rental is located on the ground level. Our units differ vastly from other Florida Keys lodgings because our property is right on Florida Bay. If you trailer your boat, the dockage is a few feet from the back door. Our docks can handle boats up to 25’ and you can park your trailer in our front lot. There is a boat ramp just two blocks away. Studio 1 can sleep 2 adults and one child (up to 12 years). We have a king size bed and a futon.

Conch House 3 Bedroom Suite at Grassy Flats Resort
Our spacious three-bedroom suites offer three private rooms with one king-sized bed, two queen-sized beds, and two full baths, with extra room for all of your water sports gear. These deluxe suites can comfortably accommodate up to six people with double occupancy per room, so grab some friends and come soak up the vibes! A full kitchen gives you all the tools and space you need for families and friends to enjoy meals together.

Conch House 2 Bedroom Suite at Grassy Flats Resort
Enjoy a Grassy Key Getaway in our spacious two-bedroom suite! With private bedrooms that each have one queen bed, you can comfortably accommodate up to four guests, with extra room to store your water sports gear. A fully equipped kitchen makes it ideal for cooking family meals and dining comfortably in the suite. This unit has two queen beds, 1.5 bathrooms, a full kitchen, living/dining area, and two private balconies.

Wreckers House Double Queen Room - Adults Only
Adults-only building, available for guests ages 21+ only. Thoughtfully furnished with mixed metals and woods, the Wreckers House tells the story of ships and their crews of "wreckers" who once salvaged goods from the sunken ships in the Florida Keys. Enjoy a sunrise view and an ocean breeze from your private balcony that overlooks the pool and the Atlantic. This room has a mini fridge and an espresso machine.

Wreckers House King Room - Adults Only
Adults-only building for guests ages 21+ only. Thoughtfully furnished with mixed metals and woods, the Wreckers House tells the story of ships and their crews of "wreckers" who once salvaged goods from the sunken ships in the Florida Keys. Enjoy a sunrise view and an ocean breeze from your private balcony that overlooks the pool and the Atlantic. This room has a mini fridge and an espresso machine.

Family Room in Duck Key | Sauna, Kayak & Pools
Gather the crew in the Family Oasis—a bright, roomy hideaway where bunk beds delight the kids and a plush king bed welcomes parents. Ideal for up to five guests, this relaxing space blends laid-back comfort with family-ready convenience. Located in Hawks Cay Resort, enjoy a full day of waterside fun, unwind in your oversized room, and let island time set the pace for your unforgettable stay.

Marathon Oceanfront | 2 King Beds + Balcony
Discover oceanfront luxury in the Oceanfront Balcony | 2BR 2Kings guestroom. This spacious retreat features two king beds, two deluxe bathrooms, and a private oceanview terrace for seamless indoor-outdoor living. Relax with modern comforts like a Smart TV, complimentary WiFi, and an entertainment system, and enjoy five pools, beachfront dining, and endless adventures in the Florida Keys.

Marathon Oceanfront Room | King Bed + 5 Pools
Indulge in oceanfront luxury with the Oceanfront Balcony | King room. Featuring a plush king bed, a spa-like bath with a deep soaking tub and walk-in rainfall shower, and a private oceanview terrace, this serene retreat is perfect for relaxation. Enjoy modern comforts, complimentary WiFi, five pools, beachfront dining, and endless coastal adventures in the heart of the Florida Keys.

Humidor House King Room - Adults Only
Adults-only building, available for guests ages 21+ only. Decorated with an ode to Caribbean cigar making, the Humidor House has a cozy, sophisticated feel. With a private oceanfront balcony that's just steps away from the water, it’s the perfect getaway for solo travelers and couples alike. This room has a mini fridge and an espresso machine.
Popular amenities for Marathon boutique hotels
Family-friendly boutique hotels

Marathon Beachfront | 2 Queens + Veranda

Marathon Beachfront Suite | 1BR Veranda +Luxe Bath

Marathon Beachfront | King Bed + Veranda

King Suite Sea View

Blue Sea Deluxe Sea View Suite (Celeste)

Deluxe King

Marathon Beachfront | 2Kings, Veranda + 2LuxeBaths

Marathon Oceanfront Room | 2Queens + Spa-Like Bath
Boutique hotels with a patio

Resort View Family Suite

Conch Key Villas #1. Fun, fishing & great sunsets

Wreckers House Double Queen Room - Adults Only

Galleon King Suite - Adults Only
Other boutique hotel holiday rentals

Poolside Room w/ Spa & Tiki Beach | No Hidden Fee

Poolside Room w/ Kayak & Sauna | No Hidden Fee!

King ADA w/ Views in Duck Key | Marina, Spa & Pool

Dbl Queen Room | Pool, Spa & Kayak | No Hidden Fee

Duck Key Trip! | ADA Family Rm w/ Snorkeling + Spa

Two Bedroom Suite

Cozy Queen Rm in Duck Key | Sauna & Snorkeling

Tropical Duck Key Escape! | King Rm w/ Pools & Spa
Destinations to explore
- Apartment rentals Marathon
- Rentals with an accessible-height toilet Marathon
- Beachfront rentals Marathon
- Rentals with breakfast Marathon
- Flat rentals Marathon
- Hotel rooms Marathon
- Rentals with outdoor seating Marathon
- Family-friendly rentals Marathon
- Villa rentals Marathon
- Rentals with beach access Marathon
- Beach house rentals Marathon
- Rentals with lake access Marathon
- Rentals with a washing machine and dryer Marathon
- Rentals with pools Marathon
- Rentals with a firepit Marathon
- Pet-friendly rentals Marathon
- Rentals with a patio Marathon
- House rentals Marathon
- Rentals with a hot tub Marathon
- Townhouse rentals Marathon
- Rentals with a kayak Marathon
- Cottage rentals Marathon
- Fitness-friendly rentals Marathon
- Rentals with a fireplace Marathon
- Waterfront rentals Marathon
- Rentals with an EV charger Marathon
- Luxury rentals Marathon
- Boutique hotels Monroe County
- Boutique hotels Florida
- Boutique hotels United States
- Everglades National Park
- Sombrero Beach
- Smathers Beach
- Bahia Honda State Park
- Ernest Hemingway Home & Museum
- Robbies Marina Of Islamorada
- Seven Mile Bridge
- Theater of the Sea
- Fort Zachary Taylor Historic State Park
- Key Largo Kampground And Marina
- Florida Keys Aquarium Encounters
- Dolphin Research Center
- Harry Harris Beach and Park
- Founder's Park
- Southernmost Point
- Conch Key
- Key West Lighthouse Museum
- Mel Fisher Maritime Museum
- Truman Little White House
- Curry Hammock State Park
- The Rain Barrel Village





